Pacbio whole genome shotgun sequencing of genomic DNA library 'PACBIO... - SRA

SRX236545: Pacbio whole genome shotgun sequencing of genomic DNA library 'PACBIO-315' containing sample 'BAA-1240' from individual 'Enterococcus coccae BAA-1240'
2 PACBIO_SMRT (PacBio RS) runs: 163,482 spots, 247.8M bases, 974.1Mb downloads

UUID: c46f9dbd-bee4-463c-869e-21067ecf6269

Design: Pacbio sequencing of Enterococcus caccae ATCC BAA-1240 via random selection

Submitted by: Broad Institute (BI)

Study: Enterococcus caccae ATCC BAA-1240 Genome sequencing and assembly

PRJNA88859 • SRP021601 • All experiments • All runs

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Genome Sequencing of Enterococcus

Sample: Generic sample from Enterococcus caccae ATCC BAA-1240

SAMN00809121 • SRS416706 • All experiments • All runs

Organism: Enterococcus caccae ATCC BAA-1240

Library:

Name: PACBIO-315

Instrument: PacBio RS

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Spot descriptor:

1 forward

Experiment attributes: (show all 15 attributes...) (hide...)

gssr_id: 196351.0

lsid: broadinstitute.org:bsp.prod.sample:2Z2O6

material_type: DNA:DNA Somatic

pacbio_rs_binding_kit: DNA/Polymerase Binding Kit 2.0 (24 Rxn)

pacbio_rs_binding_kit_barcode: 001032001672551011013

pacbio_rs_template_prep_kit: DNA Template Prep Kit 2.0 (250bp - 3Kb)

pacbio_rs_template_prep_kit_barcode: 110116001540726071812

project: D3414

root_sample_id: SM-2CGDN

sample_id: SM-2Z2O6

sequencing_protocol: Standard Sequencing

template_preparation_adaptor_sequence: ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT

template_preparation_kit_insert_size: 2200

used_binding_kit_control: true

work_request: 30610

Pipeline: show...hide...

Name	Step	Program	Version
2012-09-20 22:00:20.0	Instrument Control Version	1.3.2.0.111587
base caller	2012-09-21 02:29:26.0	Primary Analysis	NRT@172.31.128.10:8082, SwVer=1320.111587, HwVer=1.0

Runs: 2 runs, 163,482 spots, 247.8M bases, 974.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR715100	81,741	91.7M	373.2Mb	2013-02-13
SRR724225	81,741	156.1M	600.9Mb	2013-02-14

ID:: 325633

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Sequence Read Archive

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